Prediction of RNA secondary structure.
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: specify the inference engine |
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: weight of base pairs |
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Prediction of RNA secondary structure by using homologous sequences.
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: specify the inference engine for secondary structure |
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: specify the inference engine for pairwise alignment |
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: weight of base pairs |
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: E-value for homology search against Rfam |
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: number of homologous sequences |
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Prediction of RNA pseudoknot based on maximizing expected accuracy.
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: specify the inference engine |
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(NUPACK can be selected only when RNA length is <= 100nt) |
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: weight of base pairs (level 2) |
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Calculation of energy changes of RNA secondary structures after base mutations.
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: maximal span of base pairs |
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Calculation of probabilities that each RNA base position is located
within each secondary structural context.
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: maximal span of base pairs |
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Calculation of of structural accessibility of RNA transcripts.
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: maximal span of base pairs |
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Validation of RNA secondary structure.
structure.1
structure.2
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Capturing alternative secondary structures of RNA.
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: specify the inference engine for canonical structure |
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: weight of base pairs |
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